Q11: What ACEDB databases exist?

A11:

Too many to maintain an up-to-date listing. The information below was current as of mid-1998.

[Curators, if you wish to update or add to this list please submit changes as HTML.]

A repository of many of these databases is maintained by CBCG, both for anonymous ftp at ftp://ars-genome.cornell.edu/pub and for WWW access via Webace at http://ars-genome.cornell.edu/.

Database : AaeDB
Species : Aedes aegypti (yellow fever mosquito)
ACEDB_version : 4.3
WWW : http://klab.agsci.colostate.edu/
Curator : Dennis Knudson, dknudson@lamar.colostate.edu
Co-Curator : Dave Severson, dave@aedes.vetsci.wisc.edu
Co-Curator : Leonard Munstermann, munst@biomed.med.yale.edu
Contact : aaedbmgr@klab.agsci.colostate.edu
Data_updated : regularly
FAQ_updated : April 1997

Database : AalDB
Species : Aedes albopictus (Asian tiger (forest day) mosquito)
ACEDB_version : 4.3
WWW : http://klab.agsci.colostate.edu/
Curator : Dennis Knudson, dknudson@lamar.colostate.edu
Co-Curator : Dave Severson, dave@aedes.vetsci.wisc.edu
Co-Curator : Leonard Munstermann, munst@biomed.med.yale.edu
Contact : aaedbmgr@klab.agsci.colostate.edu
Data_updated : regularly
FAQ_updated : April 1997

Database : ACeDB
Species : Caenorhabditis elegans
Current version: 4-8
Curator : Jean Thierry-Mieg, mieg@kaa.crbm.cnrs-mop.fr
Curator : Richard Durbin, rd@sanger.ac.uk
Curator : Sylvia Martinelli, sylvia@sanger.ac.uk
Availability: Unix and Macintosh versions via anonymous ftp
FTP: USA - ncbi.nlm.nih.gov in repository/acedb
FTP: England - ftp.sanger.ac.uk in pub/acedb
FTP: France - lirmm.lirmm.fr in genome/acedb
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : August 1995

Database : aCHEdb
Species : wide range of species
Subject : alpha/beta fold family of proteins database ESTHER. Sequences phylogenetically related to cholinesterases (alpha/beta hydrolase, carboxylesterases, lipases, adhesion molecules.)
Comment : Converted to ACEDB from the original ESTHER database.
ACEDB_version : UNIX 4.5, MacAce 4.0b4
Data_version : August 1997
Curator : Xavier Cousin - cousin@ensam.inra.fr
Curator : Thierry Hotelier - hotelier@ensam.inra.fr
Curator : Arnaud Chatonnet - chatonne@ensam.inra.fr
Contact : chedb@ensam.inra.fr
Availability: Unix and Macintosh versions via anonymous ftp
FTP: ftp://ftp.toulouse.inra.fr in pub/esther
WWW : http://www.ensam.inra.fr/cholinesterase
FAQ_updated : September 1997

Database : AgaDB
Species : Anopheles gambiae (malaria mosquito)
ACEDB_version : 4.3
WWW : http://klab.agsci.colostate.edu/
Curator : Dennis Knudson, dknudson@lamar.colostate.edu
Co-Curator : Dave Severson, dave@aedes.vetsci.wisc.edu
Co-Curator : Leonard Munstermann, munst@biomed.med.yale.edu
Contact : aaedbmgr@klab.agsci.colostate.edu
Data_updated : regularly
FAQ_updated : April 1997

Database : AGsDB (A Genus species Database)
Species : Aspergillus nidulans
Species : Neurospora crassa
Species : Bos taurus (cow)
Species : Homo sapiens anchor loci
Species : Gossypium hirsutum (cotton)
Species : Neurospora crassa
Species : Homologs of Aspergillus cell cycle loci for budding and fission yeast
Curator : Leland Ellis, leland@straylight.tamu.edu
ACeDB_version : 3.0
Subject: Contains extensions to the Human C21 Models to provide for multiple species, and queries between species via Homologs (e.g., cell cycle loci with links via Homologs between Aspergillus and budding C. cerevisiae) and fission (S. pombe yeast); interacting loci via defined Interactions for each locus Revision : AAnDB for Aspergillus nidulans and ABtDB for Bos taurus (cow) have been folded into AGsDB, and are not being developed futher as individual species databases.
WWW : http://keck.tamu.edu/cgi/agsdb/agsdbserver.html FTP: ftp://keck.tamu.edu/pub/agsdb/agsdb1_0_acedb3_0_solaris2.3.tar.Z
FAQ_updated : March 1994

Database : Alfagenes
Species : Medicago sativa (alfalfa)
Curator : D. Z. Skinner, dzolek@ksu.ksu.edu
Telephone : (913) 532-7247
ACEDB_version : 3.0
FTP : probe.nalusda.gov in pub/alfagenes
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : July 1995

Database : AnoDB
Species : Anopheles sp.
ACEDB_version : 4.5
WWW : http://konops.imbb.forth.gr/AnoDB/
Curator : Christos Louis, louis@konops.imbb.forth.gr
Co-Curator : Pantelis Topalis, topalis@konops.imbb.forth.gr
Contact : AnoDB-comments@konops.imbb.forth.gr
Data_updated : regularly
FAQ_updated : August 1997

Database : AtDB
Species : Arabidopsis thaliana
ACEDB_version : UNIX 4.3, MacAce 4.0b4
Data_version : 4-7
PI : J. Michael Cherry
Curator : David Flanders
Contact : arab-curator@genome.stanford.edu
Availability : UNIX and Macintosh versions via anonymous ftp
FTP : genome-ftp.stanford.edu in arabidopsis/AtDB
FTP : ncbi.nlm.nih.gov in repository/AtDB
WWW : http://genome-www.stanford.edu
FAQ_updated : December 1996

Database : AtrDB
Species : Aedes triseriatus (Eastern tree hole mosquito)
ACEDB_version : 4.3
WWW : http://klab.agsci.colostate.edu/
Curator : Dennis Knudson, dknudson@lamar.colostate.edu
Co-Curator : Dave Severson, dave@aedes.vetsci.wisc.edu
Co-Curator : Leonard Munstermann, munst@biomed.med.yale.edu
Contact : aaedbmgr@klab.agsci.colostate.edu
Data_updated : regularly
FAQ_updated : April 1997

Database : BeanGenes
Species : Phaseolus and Vigna
Curator : Phillip E. McClean, mcclean@beangenes.cws.ndsu.nodak.edu
ACEDB_version : 4.1
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : September 1995

Database : BrassicaDB
Species : Brassica napus (Canola/Oilseed Rape) and its parental diploid species
ACEDB_version : 4.5
Description : Genetic maps of Brassica napus, QTL analyses for agronomic traits, literature references and B. napus-specific DNA sequences will be incorporated. We aim to integrate with B. napus genetic maps developed elsewhere and to write new displays that will link BrassicaDB with the AGR (Arabidopsis thaliana) database through gene orthologies that are being established between these closely related plant genomes.
PI : Martin Trick, Martin.Trick@bbsrc.ac.uk
Curator/Developer : Hamish McWilliam, hamish.mcwilliam@bbsrc.ac.uk
WWW : http://synteny.nott.ac.uk/brassica.html
Data_updated : Under development
FAQ_updated : July 1998

Database : ChlamyDB
Species : Chlamydomonas
Curator : Elizabeth Harris
Contact : chlamy@acpub.duke.edu
ACEDB_version : 3.0
Data_version : 1.2
Availability : Macintosh and UNIX versions via anonymous ftp
FTP : probe.nalusda.gov in pub/chlamydb
Gopher : ftp.duke.edu/11/pub/chlamy
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : August 1995

Database : CIMMYT (Wheat International Nursery Data)
Species : Triticum spp.
ACEDB_version : 4.0
Curator : Hector Sanchez, hsanchez@cimmyt.mx
FTP : probe.nalusda.gov in pub/cimmyt
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : September 1995

Database : CoolGenes
Species : Cool Season Food Legumes; Pisum, Lens, Cicer, Lathyrus, Vicia faba
Curator : Fred Muehlbauer, muehlbau@wsu.edu
ACEDB_version : 3.0
Gopher : gopher://probe.nalusda.gov:7000/11/genome.databases/coolgenes/
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : January 1996

Database : CottonDB
Species : Gossypium hirsutum (cotton) and related species
PI : Russell J. Kohel (rjk0339@acs.tamu.edu), USDA-ARS, Southern Crops Research Laboratory, 2765 F&B Road, College Station, Texas 77845
Curator : Gerard R. Lazo, lazo@tamu.edu
Curator : Sridhar Madhavan, msridhar@tamu.edu
Phone : 409-260-9311
Fax : 409-260-9333
ACEDB_version : 3.0
Data_version : January 1995 (version 95.1)
FTP : probe.nalusda.gov in pub/cottondb
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
Data_submission_form : http://algodon.tamu.edu/
FAQ_updated : January 1995

Database: Cruzdb
Species: Trypanosoma cruzi
PI: Wim Degrave
ACEDB_version: 4.3
Curator: Martin Aslett
Contact: Martin Aslett, aslett@ebi.ac.uk
FTP: (when available) ftp.ebi.ac.uk/pub/databases/parasites/cruzi/
WWW: http://www.ebi.ac.uk/parasites/parasite-genome.html
Data_updated : In development
FAQ_updated : November 1996

Database : CSNDB
Focus : Cell Signaling Networks
Species : human
Curator : Takako Igarashi, taka@nihs.go.jp
Curator : Tsuguchika Kaminuma, kaminuma@nihs.go.jp
Assistant_Curator : Masumi Yukawa, yukawa@nihs.go.jp
Assistant_Curator : Shikiko Hasegawa, shasegaw@nihs.go.jp
Contact : Takako Igarashi, taka@nihs.go.jp
ACeDB_version : 4.1
Data : molecular data of signal molecules, molecular data of signal transductions, signal transduction pathways, domain structure and function of signal molecules, and three dimensional structures of signal molecules.
Availability : CSNDB is on WWW. WWW-browser is required to attach molecular viewer RasMol (ftp: colonsay.dcs.ed.ac.uk ) for displaying three dimensional structure of protein.
WWW : http://geo.nihs.go.jp/csndb.html

Database : CupDB
Species : Culex pipiens
ACEDB_version : 4.3
WWW : currently unavailable via www
Curator : Dennis Knudson, dknudson@lamar.colostate.edu
Co-Curator : Dave Severson, dave@aedes.vetsci.wisc.edu
Co-Curator : Leonard Munstermann, munst@biomed.med.yale.edu
Contact : aaedbmgr@klab.agsci.colostate.edu
Data_updated : regularly
FAQ_updated : April 1997

Database : Cyanoace
Species : Cyanobacterium synechocystis sp. strain PCC6803
Developer : Nobuyuki Miyajima, miyajima@kazusa.or.jp
Comment : Converted to ACEDB from Sybase
FTP : ftp://ftp.kazusa.or.jp/pub/acedb/cyanoace/
WWW : http://www.kazusa.or.jp/cyanobase/
Remark : WWW interface uses Java enhanced clickable maps.
FAQ_updated : December 1996

Database : EthnobotDB (worldwide plant uses)
Species : wide range of plant species
ACEDB_version : 4.0
Comment : Converted to ACEDB from the original SQL database.
Curator : Stephen M. Beckstrom-Sternberg, peosb@ars-grin.gov
Curator : James A. Duke, ngrljd@ars-grin.gov
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : June 1995

Database: FilDB
Species: Filarial nematodes
PI: Mark Blaxter
ACEDB_version: 4.3
Curator: Martin Aslett
Contact: Mark Blaxter, mark.blaxter@ed.ac.uk
Contact: Martin Aslett, aslett@ebi.ac.uk
FTP: (when available) ftp.ebi.ac.uk/pub/databases/parasites/Brugia
WWW: http://helios.bto.ed.ac.uk/mbx/fgn/filgen.html
WWW: http://www.ebi.ac.uk/parasites/parasite-genome.html
Data_updated: In development
FAQ_updated : November 1996

Database : FoodplantDB (Native American Food Plants)
Species : Over 1,100 plant species
ACEDB_version : 4.0
Curator : Stephen M. Beckstrom-Sternberg, peosb@ars-grin.gov
Curator : James A. Duke, ngrljd@ars-grin.gov
Comment : Converted to ACEDB from ORACLE.
Comment : Data originally from a publication by Yanovsky, Elias. 1936. Food Plants of the North American Indians. USDA Miscellaneous Publication Number 237.
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : May 1995

Database : GrainGenes
Species : Wheat, barley, rye, oats, sugarcane, relatives
Curator : David E. Matthews, matthews@greengenes.cit.cornell.edu
Curator : Gerard R. Lazo, lazo@pw.usda.gov
PI : Olin D. Anderson, oandersn@pw.usda.gov
ACEDB_version : 4_5 (Unix), 4.1b1 (MacAce)
Data_version : 1.8, December 1997
Availability : UNIX, Windows, Macintosh versions via anonymous ftp
Availability : Windows, Macintosh versions on CD-ROM from Dr. Baek Hie Nahm, Korea Rice Genome Research Program, Myongji University, Yongin, Korea.
FTP : probe.nalusda.gov in pub/graingenes
FTP : grain.jouy.inra.fr in pub/database
WWW : htpp://ars-genome.cornell.edu/
WWW : http://wheat.pw.usda.gov/
WWW : http://grain.jouy.inra.fr
Gopher : greengenes.cit.cornell.edu
Gopher : grain.jouy.inra.fr
Gopher : probe.nalusda.gov:7002
Gopher : probe.nalusda.gov:7000/11/genome.databases/
FAQ_updated : December 1997

Database : IGD (Integrated Genomic Database)
Species : Homo sapiens
Subject : Chromosome 21
Availability : September 1994 by ftp, on-line server October 1994
Contact : Otto Ritter, o.ritter@dkfz-heidelberg.de
Contact : Jean Thierry-Mieg, mieg@kaa.cnrs-mop.fr
Contact : Nicole Creau-Goldberg, creau@arthur.citi2.fr
Contact : Jean-Maurice Delabar, delabar@arthur.citi2.fr
Description : IGD (Integrated Genomic Database) aims to integrate multiple public general molecular biology and human genome specific databases into single logical database with unified interface to existing analysis tools. From data produced by the 4th International Workshop on Chromosome 21 (Genomics,1993,18,735-744) and from data provided by or taken from the following databases and data repositories: GDB, OMIM, EMBL, CEPH, Genethon, UKProbeBank, and RLDB.

Database : IXDB (Integrated X chromosome DataBase)
Species: Homo sapiens
Subject: Chromosome X
Acedb_version : 4.1
Data: The YAC map constructed by the Max-Planck-Institut fuer Molekulare Genetik in Berlin, with all the attached experimental data necessary to reconstruct the map. Information on each of 9000 YAC clones mapped to the X chromosome, and constituting the YAC collection assembled with clone sets from 14 different laboratories worldwide.
Latest_release:March 1996
Curator: Hugues Roest Crollius, roest@mpimg-berlin-dahlem.mpg.de
Contact: Ulf Leser, leser@mpimg-berlin-dahlem.mpg.de
PI: Hans Lehrach
FTP: ftp.mpimg-berlin-dahlem.mpg.de in directory pub/lehrach/x-map
WWW: http://www.mpimg-berlin-dahlem.mpg.de/~xteam

Database: Leishdb
Species: Leishmania major, L. infantum, L. peruviana, L. donovani and others
PI: Jennie Blackwell
PI: Al Ivens
ACEDB_version: 4.3
Curator: Martin Aslett
Contact: Martin Aslett, aslett@ebi.ac.uk
FTP: ftp.ebi.ac.uk/pub/databases/parasites/Leish
WWW: http://www.ebi.ac.uk/parasites/parasite-genome.html
WWW: http://www.ebi.ac.uk/parasites/leish/leishpage.html (in development)
Data_updated: October 1996
FAQ_updated : November 1996

Database : LIGM-DB
Curator : Veronique Giudicelli
Focus : genetic and physical mapping of loci of Immunoglobulins and Tcell receptors
PI : Marie-Paule Lefranc
Contact : Veronique Giudicelli, LIGM IGMM UMR CNRS 9942, BP 5051 Rte de Mende, 34000 Montpellier, giudi@ligm.crbm.cnrs-mop.fr

Database : MaizeDB
Species : Zea mays L. ssp. mays and related species
Content : Maps, raw map data, loci, probes, genetic stocks, variations, mutant images, agronomic traits, gene products, QTL, bibliography, colleague addresses; hardlinks to sequence and germplasm databases.
Latest_release : Oct 1996
Acedb_version : 4.1
Curator : Mary Polacco, maryp@teosinte.agron.missouri
PI : Ed Coe, Jr., ed@teosinte.agron.missouri.edu
Systems : Denis Hancock, dhancock@teosinte.agron.missouri.edu
FTP : probe.nalusda.gov/pub/maizedb/macedist961001.tar.gz
WWW : http://www.agron.missouri.edu
WEBACE : http://ars-genome.cornell.edu/
Contact : db_request@teosinte.agron.missouri.edu
Comment : Data are periodically extracted into ACEDB format from Sybase
Comment : Genera software used to maintain the Sybase database and its gateways, except for ACEDB
Comment : ACEDB releases are announced on the MAIZE bulletin board; http://www.bio.net/hypermail/MAIZE/
Comment : WEBACE records are hardlinked to the Sybase server where data are curated
Funding : USDA ARS Plant Genome Research Program
FAQ_updated : Mar 7, 1997

Database : Mendel (plant wide gene names)
Species : wide range of plant species
Subject : standardized designations for sequenced genes
Comment : The purpose is to provide a common system of nomenclature for substantially similar genes across the plant kingdom. Mendel is maintained by the Commission on Plant Gene Nomenclature.
ACEDB_version : 4.0
Curator : Carl Price, price@mbcl.rutgers.edu
Curator : Ellen Reardon, reardon@mbcl.rutgers.edu
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu/
FAQ_updated : July 1995

Database : Millet Genes
Species : Pennisetum glaucum (Pearl Millet)
ACEDB_version : 4.3
Curator : Matt Couchman, Matthew.Couchman@bbsrc.ac.uk
PI : Katrien Devos, Katrien.Devos@bbsrc.ac.uk
FTP: ftp://jiio5.jic.bbsrc.ac.uk/pub/millet
WWW : http://synteny.nott.ac.uk/millet.html
WWW : http://jiio5.jic.bbsrc.ac.uk:8000/index.shtml
WWW : http://ars-genome.cornell.edu
FAQ_updated : March 1997

DataBase : Mousedb
Species : Mus Musculus
Species : Homo Sapiens
ACEDB_version : 3.0 with extensions to define and display cytogenetic data.
Description : Mouse genome data from the published literature, including mouse genes with phenotypic effects, chromosome anomalies, imprinted regions and man-mouse homologies with associated pathological disorders. The maps are consensus ones. They use data, such as the HIS and anomaly data, to show alignments between the genetic and cytogenetic maps.
Curator : Rachael Selley, rselley@har-rbu.mrc.ac.uk
PI : Mary Lyon
PI : Jo Peters
Availability : Mousedb is available publicly from the UK HGMP Resource Centre's computing service via the INTERNET. For user id. please contact Administration, HGMP Resource Centre, Hinxton Hall, Cambridgeshire CB10 1RQ, UK.
Tel: (+44) 1223 494520 Fax: (+44) 1223 494510
Contact : Rachael Selley, MRC Radiobiology Unit, Chilton, Didcot, Oxon OX11 ORD
FAQ_updated : July 1995

Database : MPNADB (Medicinal Plants of Native America)
Species : Over 2,100 plant species
Curator : Daniel E. Moerman, dmoerman@umich.edu
Curator : Stephen M. Beckstrom-Sternberg, peosb@ars-grin.gov - ACEDB version
Comment : MPNADB is based on a two-volume book of the same name published in 1986 by the Museum of Anthropology of the University of Michigan. MPNADB was first developed at the University of Michigan in DBase II.
ACEDB_version : 4.0
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : June 1995

Database : MsqDB
Species : Interspecies Mosquito database
ACEDB_version : 4.3
WWW : http://klab.agsci.colostate.edu/
Curator : Dennis Knudson, dknudson@lamar.colostate.edu
Co-Curator : Dave Severson, dave@aedes.vetsci.wisc.edu
Co-Curator : Leonard Munstermann, munst@biomed.med.yale.edu
Contact : aaedbmgr@klab.agsci.colostate.edu
Data_updated : regularly
FAQ_updated : April 1997

Database : MycDB
Species : Mycobacteria
Comment : MycDB is a collation of data on the mycobacteria, causative agents of tuberculosis and leprosy. It is centered on the mapping and sequencing projects under way in M.leprae and M.tuberculosis.
Curator : Staffan Bergh, staffan@biochem.kth.se
Curator : Stewart Cole, stcole@pasteur.fr
ACEDB_version : 4.3
Data_version : 4-22 (December 1996)
FTP : www.biochem.kth.se (130.237.52.64) in pub/MycDB
FTP : ftp.pasteur.fr (157.99.64.12) in pub/MycDB
FTP : bioinformatics.weizmann.ac.il (132.76.55.12) in pub/databases/acedb/mycdb
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://www.biochem.kth.se/MycDB.html
WWW : http://ars-genome.cornell.edu
FAQ_updated : December 1996

Database : OMIA (Online Mendelian Inheritance in Animals)
Species : wide range of animal species
Subject : gene and phene (familial trait or phenotype) information
Comment : MIA is modeled after Victor McKusick's Mendelian Inheritance in Man (MIM) database and was developed at the University of Sydney, Australia, in Advanced Revelation.
Curator : Frank Nicholas, frankn@doolittle.vetsci.su.oz.au
ACEDB_version : 4.0
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
WWW : http://morgan.angis.su.oz.au/BIRX/phenes_form.html
FAQ_updated : September 1995

Database : PhytochemDB (Plant Chemicals)
Species : wide range of plant species
Subject : Consists primarily of plant chemical data, including quantity, taxonomic occurrence, and chemical activity.
Comment : Converted to ACEDB from the original SQL database.
ACEDB_version : 4.0
Data_version : July 1994
Curator : Stephen M. Beckstrom-Sternberg, peosb@ars-grin.gov
Curator : James A. Duke, ngrljd@ars-grin.gov
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : June 1995

Database : PomBase
Curator : Sean Walsh, svw@sanger.ac.uk
Curator : Marie-Adele Rajendream
PI : Bart Barrell, barrell@sanger.ac.uk
Species : Schizosaccharomyces pombe
ACEDB_version : 4.1
FTP : ftp.sanger.ac.uk in pub/PomBase
FAQ_updated : September 1995

Database : PVP (Plant Variety Protection)
Species : Glycine max (soybeans)
Subject : Data about plant varieties that have been granted a Certificate of Protection by the Plant Variety Protection Office.
Curator : Stephen M. Beckstrom-Sternberg, sbeckstr@nalusda.gov - ACEDB version
ACEDB_version : 4.0
Contact: The Plant Variety Protection Office, Room. 500, National Agriculture Library, 10301 Baltimore Blvd., Beltsville, Maryland 20705
Telephone : 301-504-5518
Fax : 301-504-5291
Email : Jeff Strachan, strachan@locus.nalusda.gov
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : June 1995

Database : Receptor Database
Species : all
Curator : Kotoko Nakata, nakata@nihs.go.jp
Co-Curator : Takako Igarashi, taka@nihs.go.jp
Co-Curator : Tsuguchika Kaminuma, kaminuma@nihs.go.jp
Contact : Kotoko Nakata, nakata@nihs.go.jp
ACeDB_version : 4.1
WWW : http://impact.nihs.go.jp/RDB.html
Data_updated : regularly
FAQ_updated : October 1997

Database : RiceGenes
Species : Oryza sativa
Curator : Edie Paul, epaul@nightshade.cit.cornell.edu
PI : Susan McCouch
ACEDB_version : 4.1
FTP : probe.nalusda.gov in pub/ricegenes
Gopher : nightshade.cit.cornell.edu
Gopher : probe.nalusda.gov:7007
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : November 1996

Database : SacchDB
Species : Saccharomyces cerevisiae
Subject : Budding (common baker's) Yeast Genome
ACEDB_version : UNIX 4.3, MacAce 4.0b4
Data_version : 4.6
Data : All Saccharomyces genes contained in the Registry of Gene Names. Results of the completed chromosomal sequencing projects have been integrated into the database. Physical Maps based on DNA sequencing projects, hybridization to the Olson/Riles prime filter grids, and restriction mapping. For the completely sequenced chromosomes the Olson prime clones have been re-mapped (on the computer) to the DNA sequence. Saccharomyces DNA sequences contained within GenBank are incorporated. Literature references, most including abstracts, for the information contained within the database. Gene protein product information obtained from the YPD database (Garrels and Latter, CSHL) and the literature. Genetic Maps including the underlying two point tetrad data. Including all tetrad data reported in previous additions of the Mortimer Yeast Maps.
FTP : genome-ftp.stanford.edu in pub/yeast/SacchDB
FTP : ncbi.nlm.nih.gov in repository/SacchDB
WWW : http://genome-www.stanford.edu/
Funding : National Center for Human Genome Research, NIH
PI : David Botstein, botstein@genome.stanford.edu
Project Manager/Curator : Mike Cherry, cherry@genome.stanford.edu
Curator : Selena Dwight, dwight@genome.stanford.edu
Curator : Cathy Ball, ball@genome.stanford.edu
Curator : Caroline Adler, adler@genome.stanford.edu
Curator : Yankai Jia, jia@genome.stanford.edu
Programmer : Gail Juvik, gjuvik@genome.stanford.edu
Programmer : Shuai Weng, shuai@genome.stanford.edu
Sys. Admin : Mark Schroeder, mark@genome.stanford.edu
Contact : yeast-curator@genome.stanford.edu
Data_Submission : yeast-curator@genome.stanford.edu
FAQ_updated : September 1996

Database: SchistoDB
Species: Schistosoma mansoni (plus other schistosomes)
PI: David Johnston
ACEDB_version: 4.3
Curator: Martin Aslett
Contact: Martin Aslett, aslett@ebi.ac.uk
FTP: (when available) ftp.ebi.ac.uk/pub/databases/parasites/Schisto/
WWW: http://www.ebi.ac.uk/parasites/parasite-genome.html
Data_updated: In development
FAQ_updated : November 1996

Database : SolGenes
Subject : Solanaceae - tomato, potato, pepper
Curator : Sam Beer, sbeer@nightshade.cit.cornell.edu
PI : none currently
Release : ACEDB 4.3
FTP : probe.nalusda.gov in pub/solgenes
Gopher : nightshade.cit.cornell.edu:71
Gopher : probe.nalusda.gov:7006
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
Data_updated : May 1997
FAQ_updated : May 1997

Database : SorghumDB
Species : Sorghum bicolor (L.) Moench
PI : Keith F. Schertz, schertz@tamvm1.tamu.edu
USDA-ARS, Dept. of Soil & Crop Sciences, Texas A&M University, College Station, TX 77843-2474
Phone : (409) 260-9252
FAX : (409) 845-0456
Curator : Najeeb U. Siddiqui, nus6389@tam2000.tamu.edu
Southern Crop Improvement Facility, Crop Biotechnology Center, Texas A&M University, College Station, TX 77843-2123
Phone : (409) 862-1523
FAX : (409) 862-4790
ACEDB_version : 3.0
Data_version : 2.0
FTP : probe.nalusda.gov in pub/sorghumdb
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
FAQ_updated : September 1995

Database : SoyBase
Species : Glycine max (Soybeans) and related species
PI : Randy Shoemaker, rcsshoe@iastate.edu
Curator : David Grant, dgrant@iastate.edu
Assistant_curator : Marica Imsamde, mimsande@iastate.edu
Contact : David Grant, dgrant@iastate.edu
ACEDB-Version : 3.7
FTP : probe.nalusda.gov in pub/soybase
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
WWW : http://macgrant.agron.iastate.edu
FAQ_updated : October 1995

Database : Syndb
Species : Homo sapiens, Mus musculus
Subject : STS content mapping & directed sequencing of Human Chromosomes 21,5 with Mouse for syntenic comparison
ACEDB_version : acedb v3.3 plus moulon server
FTP : genome.lbl.gov in pub/acedb/
WWW : http://genome.lbl.gov/Genome/acepage.html
Curator : Donn F. Davy, DFDavy@lbl.gov
Contact : Arun K. Aggarwal, aggarwal@genome.lbl.gov
PI : Michael Palazzolo
PI : Chris Martin
PI : Jan-Fang Cheng, jcheng@genome.lbl.gov
FAQ_updated : October 1994

Database: ToxoDB
Species: Toxoplasma gondii
PI: David Sibley
PI: David Roos
PI: Jim Ajioka
ACEDB_version: 4.3
Curator: Martin Aslett
Contact: Martin Aslett, aslett@ebi.ac.uk
FTP: ftp.ebi.ac.uk/pub/databases/parasites/Toxo/
WWW: http://www.ebi.ac.uk/parasites/parasite-genome.html
WWW: http://www.ebi.ac.uk/parasites/toxo/toxpage.html
Data_updated: October 1996
FAQ_updated: November 1996

Database : TreeGenes
Species : Forest trees
ACEDB_version : 4.3
Curator : Bradley K. Sherman, bks@s27w007.pswfs.gov
PI : David B. Neale, dbn@s27w007.pswfs.gov
Contact : Dendrome@s27w007.pswfs.gov
FTP : probe.nalusda.gov in /pub/treegenes
Gopher : s27w007.pswfs.gov/
Gopher : probe.nalusda.gov:7508/
Gopher : probe.nalusda.gov:7000/11/genome.databases/
WWW : http://ars-genome.cornell.edu
WWW : http://s27w007.pswfs.gov/
FAQ_updated : May 1996

Database: Trypbase
Species: Trypanosoma brucei
PI: Sara Melville
ACEDB_version: 4.3
Curator: Howard Cobb
Curator: Martin Aslett
Contact: Sara Melville, sm160@mole.bio.cam.ac.uk
Contact: Martin Aslett, aslett@ebi.ac.uk
FTP: ftp.ebi.ac.uk/pub/databases/parasites/brucei
WWW: http://parsun1.path.cam.ac.uk/newtryp/toppage.htm
WWW: http://www.ebi.ac.uk/parasites/parasite-genome.html
Data_updated: October 1996
FAQ_updated: November 1996

Database : 21Bdb
Species : Homo sapiens
Subject : STS content mapping and sequencing of Human Chromosome 21
ACEDB_version : acedb.1-10 plus moulon server
Curator : Donn F. Davy, DFDavy@lbl.gov
Contact : Arun K. Aggarwal, aggarwal@genome.lbl.gov
PI : Michael Palazzolo
PI : Chris Martin
PI : Jan-Fang Cheng, jcheng@genome.lbl.gov
FTP : ftp://genome.lbl.gov in pub/acedb/
WWW : http://genome.lbl.gov/Genome/acepage.html
FAQ_updated : April 1994

Database : 11Db
Species : Homo sapiens
Subject : Physical and Genetic mapping of Human Chromosome 11 Description : 11Db attempts to show as full a picture as possible of the genetic and physical maps of Human Chromosome 11. It has two new displays, one which attempts to integrate as much of the mapping data as possible using minimal intervals, and one which displays YAC Contigs downloaded from SEGMAP datafiles.
Contact : Benedict Arnold (b.arnold@bc.ic.ac.uk)
PI : Peter Little (p.little@bc.ic.ac.uk)
ACEDB_version : based on 4_1 with added map displays.
ACEDB_version : based on 3_6 with added map displays.
Data version : 1.0
Last Update : December 1995
WWW : http://chr11.bc.ic.ac.uk
FTP : ftp.cc.ic.ac.uk
Description : 11Db attempts to show as full a picture as possible of the genetic and physical maps of Human Chromosome 11. It has two new displays, one which attempts to integrate as much of the mapping data as possible using minimal intervals, and one which displays YAC Contigs downloaded from SEGMAP datafiles.

Database : 22ace
Species : Homo sapiens
Subject : Physical map of human chromosome 22, genomic sequencing and more
ACEDB_version : 4.1
Curator : Ian Dunham, id1@sanger.ac.uk
Curator : Gareth Maslen, glm@sanger.ac.uk
PI : Ian Dunham
FTP : ftp.sanger.ac.uk in pub/human/chr22/physical_map/
WWW : http://www.sanger.ac.uk/hum22/
FAQ_updated : August 1995

Database : VoxPop
Species : Populus species
Curator : Carl G. Riches, cgr@poplar1.cfr.washington.edu
PI : Reinhard F. Stettler, STETTLER@coyote.cfr.washington.edu
ACEDB_version : 1.9
FTP : poplar1.cfr.washington.edu in /pub/
Gopher : poplar1.crf.washington.edu

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